Document QQsci workflow orchestration
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README.md
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README.md
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# QQsci
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QQsci is a Codex skill for materials-science manuscript writing, submission-package
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audit, literature-grounded revision, and Word DOI-only citation comments.
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QQsci is a Codex workflow skill for scientific manuscript projects. It acts as
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the top-level orchestrator for materials-science writing, literature-grounded
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revision, submission-package audit, Word DOI-only citation comments, and future
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specialized modules such as QQwrite, QQfigure, and QQppt.
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It is designed for workflows that combine:
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- target-journal positioning and reviewer-style pre-submission audit
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- AFM Word article template assets
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## Scope
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## Workflow Role
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QQsci is the research-writing workflow controller, not a single-purpose writing
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tool. It should decide which module to call, pass structured inputs between
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modules, and perform final package-level quality control.
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Planned module ecosystem:
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| Module | Role |
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|---|---|
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| QQnote | Zotero child-note summaries and paper comparison tables |
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| QQwrite | Long-form manuscript drafting, section rewriting, and Word template use |
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| QQfigure | Materials figures, mechanism diagrams, TOC graphics, and figure QA |
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| QQppt | Group meeting, journal club, submission, and defense slides |
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| nature-citation | High-quality DOI candidates and claim-reference support |
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| nature-data | Data availability, source data, repository, and FAIR checks |
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| nature-response | Reviewer-response and revision-letter workflows |
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| academic-humanizer | Academic de-AI wording, style naturalization, and consistency checks |
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QQsci's built-in modules remain the quality-control layer until specialized
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QQ* modules are developed.
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## Current Scope
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QQsci owns the manuscript-facing reasoning:
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- check figures, captions, SI consistency, formatting, spelling, and terminology
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- produce Markdown reviewer reports
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- add Word native citation comments containing DOI strings only
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- route work to QQnote and future QQwrite/QQfigure/QQppt modules
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- manage project-level DeepSeek, Zotero, Obsidian, and template configuration
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QQsci does not directly insert Zotero Word fields. For Word manuscripts, citation
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suggestions are added as native comments with one DOI per line.
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should not decide whether a paper is strongly related, weakly related, necessary
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for citation, or sufficient as reviewer evidence.
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QQnote must remain usable by itself. When QQsci calls QQnote, QQsci can inject
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its own DeepSeek and Zotero configuration through
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`scripts/run_qqnote_with_qqsci_config.py`.
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When QQsci calls QQnote, use:
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```powershell
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